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ASUS Z9PE-D16 Raid Boot Configuration

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Hello,
I was hoping for some guidance on setting up my boot / datastore drives.  I have the following hardware -
     Intel C602
          2x SATA6G
          4x SATA3G
     Intel C602 PCH
          4x ISAS 3G
     LSI MegaRaid?
     6x PSAS 6G
2x 250GB WD WD2500AAKX (6G)
6x 2TB WD WD20EARX (6G)
Basically I had planned to do is use the motherboard to create a Raid1 (2x C602 SATA6G) volume for ESXi5.1 boot disk and then use the 9240-8i for a Raid5 datastore.
When I create the Raid1 volume ESXi only sees 2x 250GB drives and not the Raid1 volume.
Can anyone suggest what I am doing wrong or if I should use different ports.  I know the system board isnt on the HCL but I have seen posts by other users who have done a similar configuration.
Anyone have any tips?
Thanks,
Pete

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